I then took the extra pads and jumpered the positive side between the batteries because they didn't seem to already be there, the grounds were tied already.
That's because one battery backs up the control memory and the other battery is for the Dallas DS1286 non-volatile RAM and Clock module, next to the battery.
Those clock modules have a lithium battery in them and an external Vbat input. The battery not connected to the "ext bat" connector is for the Dallas NV RAM module, which then uses its internal lithium battery as a backup battery when you replace the one on the board, so no external battery is needed while that is replaced.
You risk causing harm to the control by connecting both batteries in parallel. The SRAM in the control consumes far more current than the NV RAM module, which drains the batteries faster.
Those SureFire batteries are good for 1400mah at 3v, the Tadiran Lithium cells in AA are good for 2400mah and in C they are good for 8500mah.
Older 6264 SRAMs have a standby current of 1 microamp typical, if they are the LP variant, the 62512 SRAMs that are used on later HAAS controls have a standby current of 60 microamps.
With 4 (seen in another image on google) SRAMs totalling 4 megabytes of storage, the draw is 240 microamps when the machine is off. That's about 1/4 of a milliamp, or 4 off hours for every 1 mah of the battery. That means the longest theoretical life of a 1400mah battery is 5600 off hours.
There are 8736 hours in a year, which would suggest if you run 1 shift a day for an entire year, the batteries need replacement once per year, on average.
There are plenty of factors I'm not including, like the power draw fluctuates on the SRAMs depending on certain input states.
But anyway, those Dallas NVRAM modules have a finite life to their builtin lithium batteries. Tying the batteries together will double your SRAM retention life, but you risk losing whatever HAAS has stored in those 50 bytes of NVRAM (like a machine serial number or maybe the option codes), potentially FUBARing your self in the process.