Remove the four cap screws the hold the bracket for the Y-Axis.
Pull the Table/Saddle towards the operator side, towards you.
Look for the two fasteners, screws/cap screws on the bracket side facing you.
The small fastener is the keeper, remove it.
The larger fastener is the adjuster that 'compresses' the leadscrew nut, remove it.
Pull on the leadscrew until the nut is removed from the bracket.
Leaving the gib in and using the clamp may help hold the saddle in place.
Clean the parts and see if the nut travels freely across the length of the leadscrew.
This is what I think is going on here.
The Y-axis leadscrew has wear in the center of travel. Not a surprise. But, the leadscrew nut has been 'compressed' to compensate for the slop generated by wear.
What to do: Check the leadscrew for wear using a single thread wire. Do a comparison of the middle and extremes. If wear is excessive, chase the leadscrew threads until the depth is close over the length. Or make a new one. Or purchase a new leadscrew and nut.
The nut might be squashed too much. Put a couple of screwdrivers in the slots and try to spread it apart 'a little' from the center. Check the fit, you like? Reinstall.
I have made Y-axis leadscrew on a 10" atlas using follow rest and steady rest, easy job.
Warning: Overtighten adjuster nut when refitting/installing leadscrew will crack the knuckle casting.
Good Luck,
John
You could also purchase threaded rod. Get precision grade, the other type might be rolled thread.
A six foot length should be enough for two leadscrews. Check for left or right hand thread!