As Jons said, the proper screwdriver is critical in keeping the slots in good shape, especially the profile of the business end of the screwdriver.
I wouldn't file the heads of the screws, or at least not yet. If you put the screw in a bench block or similar fixture, with a fairly close clearance hole, you can work the buggered slots make them look much better. all you need is something solid to back up the underside of the head. Once the screw is on solid ground so to speak, take a very small ball peen or similar hammer and carefully placed light taps can move the displaced material back where it belongs, but you want to move the metal slowly. Light taps and careful are the key words. In a few minutes, you'll be surprised at the results. Then you can clean up the slot and the flat head with a fine file. You should be able to reduce the ugly by about 75% or so.
I've been doing this for years with other things such as high end fly reels, not just machinery that Bubba has visited.
CWC(4)